Skip to content

Interesting SPARQL endpoint resources

Here is a list of SPARQL endpoints interesting directly or indirectly for Recon4IMD

  • UniProt “world’s leading high-quality, comprehensive and freely accessible resource of protein sequence and functional information”
  • Rhea “expert-curated knowledgebase of chemical and transport reactions of biological interest”
  • MetaNetX “unified namespace for metabolites and biochemical reactions in the context of metabolic models”
  • Lipid Maps “LIPID Metabolites And Pathways Strategy - access to a large number of globally used lipidomics resources”
  • SwissLipids “Beta A knowledge resource for lipids and their biology”
  • Bgee “retrieval and comparison of gene expression patterns on curated, healthy wild-type, expression data”
  • Wikidata “free and open knowledge base that can be read by both humans and machines, central storage for the structured data of Wikipedia”

Registries of SPARQL endpoints

  • Wikidata “lists SPARQL endpoints, all categories”
  • YummyData “lists and monitors SPARQL endpoints that provide data of interest to the biomedical community”