FastQCFastQC Report
Tue 13 Oct 2026
tumor.recal.bam

Summary

[OK]Basic Statistics

MeasureValue
Filenametumor.recal.bam
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16674562
Total Bases1.6 Gbp
Sequence length30-100
Mean Length99
Median Length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.13.0)