VEP run statistics
| VEP version (API) | 116.2 (116) |
| Annotation sources | Cache: /config/project/data/.vep/homo_sapiens/116_GRCh38 |
| Species | homo_sapiens |
| Command line options | vep --assembly GRCh38 --cache --database 0 --dir_cache [PATH]/.vep --domains --force_overwrite --format vcf --input_file cancer_variants.vcf --offline --output_file output.txt --pick --polyphen b --sift b --symbol |
| Start time | 2026-10-28 11:38:04 |
| End time | 2026-10-28 11:38:05 |
| Run time | 1 seconds |
| Input file | cancer_variants.vcf |
| Output file | output.txt |
Data version
| 1000genomes | phase3 |
| COSMIC | 102 |
| ClinVar | 202509 |
| HGMD-PUBLIC | 20204 |
| assembly | GRCh38.p14 |
| dbSNP | 156 |
| gencode | GENCODE 50 |
| genebuild | GENCODE50 |
| gnomADe | v4.1 |
| gnomADg | v4.1 |
| polyphen | 2.2.3 |
| regbuild | 1.0 |
| sift | 6.2.1 |
General statistics
| Lines of input read | 14 |
| Variants processed | 14 |
| Variants filtered out | 0 |
| Novel / existing variants | - |
| Overlapped genes | 11 |
| Overlapped transcripts | 11 |
| Overlapped regulatory features | - |