💫 Metadata-based SPARQL editor 📝

🧑‍🏫 How to use

• Hit ctrl+enter or cmd+enter to execute the query.
• Hover the colored dot on the top left to see details about what has been extracted from the endpoint.
• Hit ctrl+space to trigger autocomplete which will automatically suggest types and predicates from the endpoint.
• If you provide a type for a subject, then suggested predicates will be based on this type.
• In the case where MacOS has overriden the ctrl+space shortcut to trigger autocomplete (sometimes they use it for the switch keyboard layout action) you can fix this by going to System settings > Keyboard > Keyboard Shortcuts > Input Sources > disable `Select the previous input source`.

ℹ️ About

Metadata used by this editor are automatically retrieved by querying the endpoints. It features:

• Context-aware autocomplete for classes and predicates based on the content of the endpoints
• Example queries
• Commonly used prefixes

See the source code repository for more details on how to generate and upload the required descriptive metadata to your endpoints, or to deploy this web component yourself.

Go to the check page to check if an endpoint contains the necessary metadata.

You can also navigate editors focusing on specific SIB endpoints:

• UniProt - protein knowledgebase
• Bgee - gene expression
• OMA - Ortholog MAtrix
• SwissLipids - A knowledge resource for lipids and their biology
• Rhea - expert-curated knowledgebase of chemical and transport reactions of biological interest
• HAMAP - High-quality Automated and Manual Annotation of Proteins
• DBGI - The Digital Botanical Garden Initiative