004

What are the anatomical entities where the APOC1 Homo sapiens gene is expressed?

Use at

• https://www.bgee.org/sparql/

PREFIX genex: <http://purl.org/genex#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
PREFIX orth: <http://purl.org/net/orth#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX up: <http://purl.uniprot.org/core/>

SELECT DISTINCT ?geneName ?anat ?anatName WHERE {
    ?seq a orth:Gene ;
        genex:isExpressedIn ?anat ;
        rdfs:label ?geneName .
    ?anat a genex:AnatomicalEntity ;
        rdfs:label ?anatName .
    ?seq orth:organism ?organism .
    ?organism obo:RO_0002162  ?species .
    ?species a up:Taxon ;
        up:scientificName "Homo sapiens" .
    FILTER (LCASE(?geneName) = LCASE('APOC1') )
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v3("?anat"):::projected 
  v4("?anatName"):::projected 
  v1("?geneName"):::projected 
  v5("?organism")
  v2("?seq")
  v6("?species")
  c6(["genex:AnatomicalEntity"]):::iri 
  c11(["Homo sapiens"]):::literal 
  c3(["orth:Gene"]):::iri 
  c9(["up:Taxon"]):::iri 
  f0[["lower-case(?geneName) = lower-case('APOC1')"]]
  f0 --> v1
  v2 --"a"-->  c3
  v2 --"genex:isExpressedIn"-->  v3
  v2 --"rdfs:label"-->  v1
  v3 --"a"-->  c6
  v3 --"rdfs:label"-->  v4
  v2 --"orth:organism"-->  v5
  v5 --"obo:RO_0002162"-->  v6
  v6 --"a"-->  c9
  v6 --"up:scientificName"-->  c11