012

rq turtle/ttl

What are the anatomical entities where the eel gene apoc1 is expressed along with its expression score independently of the strain, sex, and cell type?

Use at

• https://www.bgee.org/sparql/

PREFIX efo: <http://www.ebi.ac.uk/efo/>
PREFIX genex: <http://purl.org/genex#>
PREFIX lscr: <http://purl.org/lscr#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
PREFIX orth: <http://purl.org/net/orth#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>

SELECT DISTINCT ?anat ?anatName ?stageIRI ?score WHERE {
    ?seq a orth:Gene ;
        lscr:xrefNCBIGene <https://www.ncbi.nlm.nih.gov/gene/118230125> .
        # Or dcterms:identifier "118230125" .
    ?expression a genex:Expression ;
        genex:hasExpressionCondition ?condition ;
        genex:hasExpressionLevel ?score ;
        genex:hasSequenceUnit ?seq .
    ?anat a genex:AnatomicalEntity ;
        rdfs:label ?anatName .
    ?condition a genex:ExpressionCondition ;
        genex:hasAnatomicalEntity ?anat ;
        genex:hasDevelopmentalStage ?stageIRI ;
        genex:hasSex "any" ;
        genex:hasStrain ?strain .
    ?stageIRI a efo:EFO_0000399 .
    ?strain a efo:EFO_0005135 ;
        rdfs:label "wild-type" .
    FILTER (?anat != obo:GO_0005575)
} ORDER BY DESC(?score)

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?anat"):::projected 
  v6("?anatName"):::projected 
  v5("?condition")
  v4("?expression")
  v1("?score"):::projected 
  v3("?seq")
  v7("?stageIRI"):::projected 
  v8("?strain")
  c6(["genex:Expression"]):::iri 
  c18(["efo:EFO_0000399"]):::iri 
  c12(["genex:ExpressionCondition"]):::iri 
  c19(["efo:EFO_0005135"]):::iri 
  c3(["orth:Gene"]):::iri 
  c5([https://www.ncbi.nlm.nih.gov/gene/118230125]):::iri 
  c16(["any"]):::literal 
  c10(["genex:AnatomicalEntity"]):::iri 
  c20(["wild-type"]):::literal 
  f0[["?anat != 'obo:GO_0005575'"]]
  f0 --> v2
  v3 --"a"-->  c3
  v3 --"lscr:xrefNCBIGene"-->  c5
  v4 --"a"-->  c6
  v4 --"genex:hasExpressionCondition"-->  v5
  v4 --"genex:hasExpressionLevel"-->  v1
  v4 --"genex:hasSequenceUnit"-->  v3
  v2 --"a"-->  c10
  v2 --"rdfs:label"-->  v6
  v5 --"a"-->  c12
  v5 --"genex:hasAnatomicalEntity"-->  v2
  v5 --"genex:hasDevelopmentalStage"-->  v7
  v5 --"genex:hasSex"-->  c16
  v5 --"genex:hasStrain"-->  v8
  v7 --"a"-->  c18
  v8 --"a"-->  c19
  v8 --"rdfs:label"-->  c20