A set of SPARQL examples that are used in different SIB resources
What are the anatomical entities where the P02654 gene is expressed? Note that P02654 is a UniProtKB identifier of the APOC1 human gene.
PREFIX genex: <http://purl.org/genex#>
PREFIX lscr: <http://purl.org/lscr#>
PREFIX orth: <http://purl.org/net/orth#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX uniprotkb: <http://purl.uniprot.org/uniprot/>
SELECT DISTINCT ?anat ?anatName WHERE {
?seq a orth:Gene ;
genex:isExpressedIn ?anat ;
lscr:xrefUniprot uniprotkb:P02654 .
?anat a genex:AnatomicalEntity ;
rdfs:label ?anatName .
}
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
v2("?anat"):::projected
v3("?anatName"):::projected
v1("?seq")
c6(["genex:AnatomicalEntity"]):::iri
c5(["uniprotkb:P02654"]):::iri
c2(["orth:Gene"]):::iri
v1 --"a"--> c2
v1 --"genex:isExpressedIn"--> v2
v1 --"lscr:xrefUniprot"--> c5
v2 --"a"--> c6
v2 --"rdfs:label"--> v3