026

What are the genes expressed in the human brain?

Use at

• https://www.bgee.org/sparql/

PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX orth: <http://purl.org/net/orth#>
PREFIX genex: <http://purl.org/genex#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
PREFIX up: <http://purl.uniprot.org/core/>

SELECT DISTINCT ?gene ?geneName WHERE {
    ?gene a orth:Gene ;
        genex:isExpressedIn ?anat ;
        rdfs:label ?geneName ;
        orth:organism ?organism .
    ?anat a genex:AnatomicalEntity ;
        rdfs:label "brain" .
    ?organism obo:RO_0002162 ?species .
    ?species a up:Taxon ;
        up:scientificName "Homo sapiens" .
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?anat")
  v1("?gene"):::projected 
  v3("?geneName"):::projected 
  v4("?organism")
  v5("?species")
  c6(["genex:AnatomicalEntity"]):::iri 
  c11(["Homo sapiens"]):::literal 
  c2(["orth:Gene"]):::iri 
  c7(["brain"]):::literal 
  c9(["up:Taxon"]):::iri 
  v1 --"a"-->  c2
  v1 --"genex:isExpressedIn"-->  v2
  v1 --"rdfs:label"-->  v3
  v1 --"orth:organism"-->  v4
  v2 --"a"-->  c6
  v2 --"rdfs:label"-->  c7
  v4 --"obo:RO_0002162"-->  v5
  v5 --"a"-->  c9
  v5 --"up:scientificName"-->  c11