Query_158

rq turtle/ttl

• gene
• deletion
• sequence variation

Some cell lines with a CDKN2A deletion

Use at

• https://sparql.cellosaurus.org/sparql

PREFIX cello: <https://purl.expasy.org/cellosaurus/rdf/ontology/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
select ?cl ?cl_name ?status ?seqvar_class ?seqvar_label ?zygozity ?gene_ac ?gene_name  where {
  values ( ?seqvar_class ?gene_ac_xsd ) { ( cello:GeneDeletion "HGNC:1787") } # HGNC accession of CDKN2A
  ?cl cello:recommendedName ?cl_name .
  ?cl cello:hasSequenceVariationInfo ?annot .
  ?annot cello:variationStatus ?status .
  ?annot cello:hasTarget ?seqvar .
  optional { ?seqvar cello:zygosity ?zygozity . }
  ?seqvar a ?seqvar_class .
  ?seqvar rdfs:label ?seqvar_label .
  ?seqvar cello:ofGene ?gene .
  ?gene cello:isIdentifiedByXref ?xref .
  ?xref cello:accession ?gene_ac .
  ?xref rdfs:label ?gene_name .
}
order by ?cl_name
limit 1000
    

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v5("?annot")
  v4("?cl"):::projected 
  v1("?cl_name"):::projected 
  v10("?gene")
  v12("?gene_ac"):::projected 
  v3("?gene_ac_xsd")
  v13("?gene_name"):::projected 
  v7("?seqvar")
  v2("?seqvar_class"):::projected 
  v9("?seqvar_label"):::projected 
  v6("?status"):::projected 
  v11("?xref")
  v8("?zygozity"):::projected 
  bind0[/VALUES ?gene_ac_xsd ?seqvar_class/]
  bind0-->v2
  bind0-->v3
  bind00(["cello:GeneDeletion"])
  bind00 --> bind0
  bind01(["HGNC:1787"])
  bind01 --> bind0
  v4 --"cello:recommendedName"-->  v1
  v4 --"cello:hasSequenceVariationInfo"-->  v5
  v5 --"cello:variationStatus"-->  v6
  v5 --"cello:hasTarget"-->  v7
  subgraph optional0["(optional)"]
  style optional0 fill:#bbf,stroke-dasharray: 5 5;
    v7 -."cello:zygosity".->  v8
  end
  v7 --"a"-->  v2
  v7 --"rdfs:label"-->  v9
  v7 --"cello:ofGene"-->  v10
  v10 --"cello:isIdentifiedByXref"-->  v11
  v11 --"cello:accession"-->  v12
  v11 --"rdfs:label"-->  v13