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A GEM is primarily a set of reactions: here are all the reaction equations occurring in bigg_e_coli_core. NB: here the reac label is the one produced while compiling MetaNetX

Use at

• https://rdf.metanetx.org/sparql/

PREFIX mnx: <https://rdf.metanetx.org/schema/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>

# A GEM is primarily a set of reactions: here are all the
# reaction equations occurring in *bigg_e_coli_core*. NB: here
# the reac label is the one produced while compiling MetaNetX

SELECT ?reac_label ?chem_name ?comp_name ?coef
FROM <https://rdf.metanetx.org/> WHERE{
    ?mnet rdfs:label 'bigg_e_coli_core' ;
          mnx:gpr/mnx:reac ?reac .
    ?reac rdfs:label ?reac_label ;
          ?side      ?part .
    ?part mnx:chem ?chem ;
          mnx:comp ?comp ;
          mnx:coef ?c    .
    ?chem rdfs:comment ?chem_name .
    ?comp rdfs:comment ?comp_name .
    FILTER( ?side IN ( mnx:left , mnx:right ))
    BIND( IF( ?side = mnx:left, - ?c, ?c ) AS ?coef )
}
ORDER BY ?reac_label

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v8("?c")
  v6("?chem")
  v9("?chem_name"):::projected 
  v11("?coef"):::projected 
  v7("?comp")
  v10("?comp_name"):::projected 
  v3("?mnet")
  v5("?part")
  v4("?reac")
  v1("?reac_label"):::projected 
  v2("?side")
  a1((" "))
  c4(["bigg_e_coli_core"]):::literal 
  list0c2(["mnx:right"]):::iri 
  list0c1(["mnx:left"]):::iri 
  list0c1 --o f0
  list0c2 --o f0
  f0[[" in "]]
  f0 --> v2
  v3 --"rdfs:label"-->  c4
  v3 --"mnx:gpr"-->  a1
  a1 --"mnx:reac"-->  v4
  v4 --"rdfs:label"-->  v1
  v4 -->v2--> v5
  v5 --"mnx:chem"-->  v6
  v5 --"mnx:comp"-->  v7
  v5 --"mnx:coef"-->  v8
  v6 --"rdfs:comment"-->  v9
  v7 --"rdfs:comment"-->  v10
  bind1[/"if(?side = 'mnx:left','-1^^xsd:integer' * ?c,?c)"/]
  v2 --o bind1
  v8 --o bind1
  bind1 --as--o v11