A set of SPARQL examples that are used in different SIB resources
Find orthologous group/s at any level containing protein with Uniprot id P12345
PREFIX uniprotkb: <http://purl.uniprot.org/uniprot/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX : <http://purl.orthodb.org/>
SELECT *
WHERE {
?og a :OrthoGroup ;
:ogBuiltAt ?level;
:hasMember/rdfs:seeAlso uniprotkb:P12345 .
}
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
v2("?level"):::projected
v1("?og"):::projected
a1((" "))
c2([":OrthoGroup"]):::iri
c6(["uniprotkb:P12345"]):::iri
v1 --"a"--> c2
v1 --":ogBuiltAt"--> v2
v1 --":hasMember"--> a1
a1 --"rdfs:seeAlso"--> c6