133_major_microspecies_at_physiological_pH

ChEBI
Metabolite

Find the dominant protonation state (microspecies) of a ChEBI compound at physiological pH (7.3), e.g. valeric acid's major microspecies at pH 7.3 is its deprotonated form, valerate.

Use at

https://sparql.rhea-db.org/sparql

PREFIX chemrof: <https://w3id.org/chemrof/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX CHEBI: <http://purl.obolibrary.org/obo/CHEBI_>

SELECT
  ?compound
  ?label
  ?microspecies
  ?microspeciesLabel
WHERE {
  BIND (CHEBI:17418 AS ?compound)
  ?compound rdfs:label ?label ;
    chemrof:has_major_microspecies_at_pH7_3 ?microspecies .
  ?microspecies rdfs:label ?microspeciesLabel .
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?compound"):::projected 
  v2("?label"):::projected 
  v3("?microspecies"):::projected 
  v4("?microspeciesLabel"):::projected 
  bind0[/"'CHEBI:17418'"/]
  bind0 --as--o v1
  v1 --"rdfs:label"-->  v2
  v1 --"chemrof:has_major_microspecies_at_pH7_3"-->  v3
  v3 --"rdfs:label"-->  v4