19_draft_human_metabolome

rq turtle/ttl

Generate a draft human metabolome

Use at

• https://sparql.rhea-db.org/sparql/

PREFIX chebislash: <http://purl.obolibrary.org/obo/chebi/>
PREFIX rh: <http://rdf.rhea-db.org/>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
PREFIX up: <http://purl.uniprot.org/core/>

SELECT
  ?uniprot ?mnemonic ?rhea ?chebi ?smiles ?inchiKey
WHERE
{
  ?rhea rh:side/rh:contains/rh:compound ?compound .
  ?compound (rh:chebi|(rh:reactivePart/rh:chebi)|(rh:underlyingChebi/rh:chebi)) ?chebi .
  ?chebi chebislash:smiles ?smiles ;
          chebislash:inchikey ?inchiKey .
  SERVICE <https://sparql.uniprot.org/sparql> {
     ?uniprot up:annotation/up:catalyticActivity/up:catalyzedReaction ?rhea ;
                                             up:organism taxon:9606 ;
                                             up:mnemonic ?mnemonic .

   }
}