9

Select all Rhea reactions mapped to enzyme classification (EC numbers)

Use at

• https://sparql.rhea-db.org/sparql/

PREFIX ec: <http://purl.uniprot.org/enzyme/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rh: <http://rdf.rhea-db.org/>

# Query 9
# Select all Rhea reactions mapped to EC numbers (enzyme classification)
#
# This query corresponds to the Rhea website query:
# https://www.rhea-db.org/rhea?query=ec:*
#
SELECT ?ec ?ecNumber ?rhea ?accession ?equation
WHERE {
  ?rhea rdfs:subClassOf rh:Reaction .
  ?rhea rh:accession ?accession .
  ?rhea rh:ec ?ec .
  BIND(strafter(str(?ec),str(ec:)) as ?ecNumber)
  ?rhea rh:isTransport ?isTransport .
  ?rhea rh:equation ?equation .
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?accession"):::projected 
  v3("?ec"):::projected 
  v4("?ecNumber"):::projected 
  v6("?equation"):::projected 
  v5("?isTransport")
  v1("?rhea"):::projected 
  c2(["rh:Reaction"]):::iri 
  v1 --"rdfs:subClassOf"-->  c2
  v1 --"rh:accession"-->  v2
  v1 --"rh:ec"-->  v3
  bind0[/"substring-after(str(?ec),str('ec:'))"/]
  v3 --o bind0
  bind0 --as--o v4
  v1 --"rh:isTransport"-->  v5
  v1 --"rh:equation"-->  v6