103_uniprot_proteome_location_of_gene

rq turtle/ttl

• proteome

List UniProtKB proteins with genetic replicon that they are encoded on using the Proteome data.

Use at

• https://sparql.uniprot.org/sparql/

PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
PREFIX up: <http://purl.uniprot.org/core/>

SELECT
  DISTINCT
    ?proteomeData
    ?replicon
    ?proteome  
WHERE {
  # reviewed entries (UniProtKB/Swiss-Prot)
  ?protein up:reviewed true . 
  # restricted to Human taxid
  ?protein up:organism taxon:9606 .
  ?protein up:proteome ?proteomeData .
  BIND( strbefore( str(?proteomeData), "#" ) as ?proteome )
  BIND( strafter( str(?proteomeData), "#" ) as ?replicon )
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?protein")
  v3("?proteome"):::projected 
  v2("?proteomeData"):::projected 
  v4("?replicon"):::projected 
  c2(["true^^xsd:boolean"]):::literal 
  c4(["taxon:9606"]):::iri 
  v1 --"up:reviewed"-->  c2
  v1 --"up:organism"-->  c4
  v1 --"up:proteome"-->  v2
  bind0[/"substring-before(str(?proteomeData),'#')"/]
  v2 --o bind0
  bind0 --as--o v3
  bind1[/"substring-after(str(?proteomeData),'#')"/]
  v2 --o bind1
  bind1 --as--o v4