110_uniprot_unamed_plasmids

Sometimes it is known that a gene encoding a protein UniProtKB is located on a plasmid or an organelle, but the name of the plasmid is unknown.

Use at

• https://sparql.uniprot.org/sparql/

PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX up: <http://purl.uniprot.org/core/>

SELECT 
    ?protein 
    ?plasmidOrOrganelle
    ?label
WHERE {
    ?protein a up:Protein ;
      up:encodedIn ?plasmidOrOrganelle .
    OPTIONAL {
        ?plasmidOrOrganelle rdfs:label ?label .
    }
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v3("?label"):::projected 
  v2("?plasmidOrOrganelle"):::projected 
  v1("?protein"):::projected 
  c2(["up:Protein"]):::iri 
  v1 --"a"-->  c2
  v1 --"up:encodedIn"-->  v2
  subgraph optional0["(optional)"]
  style optional0 fill:#bbf,stroke-dasharray: 5 5;
    v2 -."rdfs:label".->  v3
  end