@prefix ex: .
@prefix rdf: .
@prefix rdfs: .
@prefix schema: .
@prefix sh: .
@prefix spex: .
ex:135_plazi_proteome a sh:SPARQLExecutable, sh:SPARQLSelectExecutable;
rdfs:comment """Connect a taxonomic treatment collected by Plazi in their synospecies system. We connect by what is called the dwc:id-ENA property which is encoded as a xsd:string which is the naked identifier of an NCBI taxon concept. Which in UniProt is encoded as an IRI starting with `http://purl.uniprot.org/taxonomy/'. After converting the taxon identifier we can query for Proteomes in UniProt for that taxon."""^^rdf:HTML;
sh:prefixes _:sparql_examples_prefixes;
sh:select """PREFIX up:
PREFIX trt:
PREFIX dwc:
PREFIX dwcFP:
SELECT
?proteome
?ncbiTaxon
?treatment
WHERE
{
{
SERVICE {
?tc a dwcFP:TaxonConcept ;
dwc:ID-ENA ?ena .
?treatment trt:augmentsTaxonConcept|trt:definesTaxonConcept ?tc ;
dwc:basisOfRecord ?mc .
?mc trt:gbifOccurrenceId ?occ .
}
}
BIND(IRI(CONCAT('http://purl.uniprot.org/taxonomy/', ?ena)) AS ?ncbiTaxon)
?proteome a up:Proteome ;
up:organism ?ncbiTaxon
}""";
spex:federatesWith ;
schema:keywords "gbif", "plazi", "proteome", "taxonomy", "treatments";
schema:target .