@prefix ex: <https://sparql.uniprot.org/.well-known/sparql-examples/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:171_batch_id_mapping_style_lookup a sh:SPARQLExecutable,
        sh:SPARQLSelectExecutable ;
    rdfs:comment "Given a batch of UniProt accessions, resolve each to its mnemonic entry name, recommended protein name, and organism in one query -- the SPARQL equivalent of the columns (EntryName, ProteinName, Organism) UniProt's own web-based ID mapping/retrieve service returns"@en ;
    sh:prefixes _:sparql_examples_prefixes ;
    sh:select """PREFIX up: <http://purl.uniprot.org/core/>
PREFIX uniprotkb: <http://purl.uniprot.org/uniprot/>

SELECT
  ?protein
  ?mnemonic
  ?recommendedName
  ?organismName
WHERE {
  VALUES ?protein { uniprotkb:P04637 uniprotkb:P01308 uniprotkb:Q13613 }
  ?protein up:mnemonic ?mnemonic ;
    up:organism ?organism .
   ?protein up:reviewed ?reviewed .
  OPTIONAL {
    ?protein up:recommendedName ?name .
  }
  OPTIONAL {
    FILTER(!BOUND(?name))
    ?protein up:submittedName ?name .
  }
  ?name up:fullName ?recommendedName .
  ?organism up:scientificName ?organismName .
}""" ;
    schema:keywords "batch lookup" , "id mapping" , "organism" ;
    schema:target <https://sparql.uniprot.org/sparql/> .