172_reviewed_members_of_a_reference_proteome

proteome
batch lookup

For a given taxon (Escherichia coli K12), find its reference proteome and list the reviewed proteins that are members of it. This goes one step further than finding just the proteome resource: a protein's up:proteome value identifies a component (e.g. a chromosome) of a proteome, whose IRI is the proteome's own IRI with a '#' fragment appended. The relation between a component and a proteome is via skos:narrower

Use at

https://sparql.uniprot.org/sparql/

PREFIX up: <http://purl.uniprot.org/core/>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>

SELECT
  ?protein
WHERE {
  ?proteome a up:Reference_Proteome ;
    up:organism taxon:83333 .
  ?protein up:proteome ?component ;
    up:reviewed true .
  ?proteome skos:narrower ?component .
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v3("?component")
  v2("?protein"):::projected 
  v1("?proteome")
  c2(["up:Reference_Proteome"]):::iri 
  c4(["taxon:83333"]):::iri 
  c7(["true^^xsd:boolean"]):::literal 
  v1 --"a"-->  c2
  v1 --"up:organism"-->  c4
  v2 --"up:proteome"-->  v3
  v2 --"up:reviewed"-->  c7
  v1 --"skos:narrower"-->  v3