@prefix ex: <https://sparql.uniprot.org/.well-known/sparql-examples/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:199_cds_sequence_discrepancy_note a sh:SPARQLExecutable,
        sh:SPARQLSelectExecutable ;
    rdfs:comment "Find a protein's cross-referenced CDS/nucleotide entry that disagrees with the reviewed Swiss-Prot sequence, together with the curator's note on why (e.g. different initiation, sequence problems, frameshift) — real curation-quality content, distinct from modeling detail"@en ;
    sh:prefixes _:sparql_examples_prefixes ;
    sh:select """PREFIX up: <http://purl.uniprot.org/core/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>

SELECT
  ?protein
  ?nucleotideEntry
  ?note
WHERE {
  ?protein a up:Protein ;
    up:reviewed true ;
    rdfs:seeAlso ?nucleotideEntry .
  ?nucleotideEntry a up:Nucleotide_Resource ;
    up:sequenceDiscrepancy ?discrepancy .
  ?discrepancy rdfs:comment ?note .
}""" ;
    schema:keywords "sequence" , "discrepancy" , "curation" ;
    schema:target <https://sparql.uniprot.org/sparql/> .