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200_protein_conflicting_external_sequence

rq turtle/ttl

• sequence
• conflict
• curation

Find a protein's conflicting sequence: an alternative translation from a nucleotide entry that another group submitted, which disagrees with UniProt's own reviewed sequence for the same protein

Use at

• https://sparql.uniprot.org/sparql/

PREFIX up: <http://purl.uniprot.org/core/>

SELECT
  ?protein
  ?externalSequence
  ?translatedFrom
WHERE {
  ?protein a up:Protein ;
    up:conflictingSequence ?externalSequence .
  ?externalSequence a up:External_Sequence ;
    up:translatedFrom ?translatedFrom .
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?externalSequence"):::projected 
  v1("?protein"):::projected 
  v3("?translatedFrom"):::projected 
  c4(["up:External_Sequence"]):::iri 
  c2(["up:Protein"]):::iri 
  v1 --"a"-->  c2
  v1 --"up:conflictingSequence"-->  v2
  v2 --"a"-->  c4
  v2 --"up:translatedFrom"-->  v3