204_taxon_name_variants

taxonomy
synonym
nomenclature

Find taxa with recorded name variants beyond their primary scientific name: a taxonomic synonym (an earlier or alternative Latin name for the same taxon) and other recorded name forms such as author citations or authority strings

Use at

https://sparql.uniprot.org/sparql/

PREFIX up: <http://purl.uniprot.org/core/>

SELECT
  ?taxon
  ?name
  (GROUP_CONCAT(DISTINCT ?syn; separator="; ") AS ?synonyms)
  (GROUP_CONCAT(DISTINCT ?other; separator="; ") AS ?otherNames)
WHERE {
  ?taxon up:scientificName ?name .
  OPTIONAL { ?taxon up:synonym ?syn }
  OPTIONAL { ?taxon up:otherName ?other }
  FILTER(BOUND(?syn) || BOUND(?other))
}
GROUP BY ?taxon ?name

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v4("?name"):::projected 
  v2("?other"):::projected 
  v6("?otherNames")
  v1("?syn"):::projected 
  v5("?synonyms")
  v3("?taxon"):::projected 
  f0[["(bound(?syn) || bound(?other))"]]
  f0 --> v1
  f0 --> v2
  v3 --"up:scientificName"-->  v4
  subgraph optional0["(optional)"]
  style optional0 fill:#bbf,stroke-dasharray: 5 5;
    v3 -."up:synonym".->  v1
  end
  subgraph optional1["(optional)"]
  style optional1 fill:#bbf,stroke-dasharray: 5 5;
    v3 -."up:otherName".->  v2
  end
  bind3[/"?syn"/]
  v1 --o bind3
  bind3 --as--o v5
  bind4[/"?other"/]
  v2 --o bind4
  bind4 --as--o v6