207_catalytic_activity_physiological_reaction

catalytic activity
reaction
Rhea

Find the physiological reaction (the direction/reaction an enzyme actually performs in vivo) associated with a catalytic activity annotation, using up:catalyzedPhysiologicalReaction, distinct from the general reaction the enzyme is capable of catalyzing (up:catalyzedReaction)

Use at

https://sparql.uniprot.org/sparql/

PREFIX up: <http://purl.uniprot.org/core/>

SELECT
  ?protein
  ?activity
  ?physReaction
WHERE {
  ?protein a up:Protein ;
    up:annotation ?activity .
  ?activity a up:Catalytic_Activity_Annotation ;
    up:catalyzedPhysiologicalReaction ?physReaction .
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?activity"):::projected 
  v3("?physReaction"):::projected 
  v1("?protein"):::projected 
  c4(["up:Catalytic_Activity_Annotation"]):::iri 
  c2(["up:Protein"]):::iri 
  v1 --"a"-->  c2
  v1 --"up:annotation"-->  v2
  v2 --"a"-->  c4
  v2 --"up:catalyzedPhysiologicalReaction"-->  v3