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209_xenologous_interaction

rq turtle/ttl

• interaction
• xenologous
• host-pathogen

Find protein-protein interactions flagged as xenologous (up:xeno), i.e. between molecules from different species, such as a host protein interacting with a pathogen protein — as opposed to an interaction between proteins of the same organism

Use at

• https://sparql.uniprot.org/sparql/

PREFIX up: <http://purl.uniprot.org/core/>

SELECT
  ?protein
  ?interaction
  ?xeno
WHERE {
  ?protein a up:Protein ;
    up:interaction ?interaction .
  ?interaction a up:Non_Self_Interaction ;
    up:xeno ?xeno .
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?interaction"):::projected 
  v1("?protein"):::projected 
  v3("?xeno"):::projected 
  c4(["up:Non_Self_Interaction"]):::iri 
  c2(["up:Protein"]):::iri 
  v1 --"a"-->  c2
  v1 --"up:interaction"-->  v2
  v2 --"a"-->  c4
  v2 --"up:xeno"-->  v3