29

Use ALLIE a service for Abbreviation / Long Form in Japanese and English to search in UniProt using Japanese.

Use at

• https://sparql.uniprot.org/sparql/

PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX up: <http://purl.uniprot.org/core/>

SELECT ?protein ?englishLabelStr
WHERE {
    SERVICE <https://data.allie.dbcls.jp/sparql>{
        ?x rdfs:label "アミロイド前駆体タンパク質"@ja ;
            rdfs:label ?englishLabel .
        FILTER(lang(?englishLabel) = "en")
    }
    BIND (STR(?englishLabel) AS ?englishLabelStr)
    ?protein a up:Protein .
    {
        ?protein (up:recommendedName|up:alternativeName) ?structuredName .
    }
    UNION
    {
        VALUES(?partType){(up:domain) (up:component)}
            ?protein ?partType ?part .
        ?part (up:recommendedName|up:alternativeName) ?structuredName .
    }
    ?structuredName ?anyKindOfName  ?englishLabelStr .
    ?anyKindOfName rdfs:subPropertyOf up:structuredNameType .
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v8("?anyKindOfName")
  v1("?englishLabel")
  v3("?englishLabelStr"):::projected 
  v7("?part")
  v6("?partType")
  v4("?protein"):::projected 
  v5("?structuredName")
  v2("?x")
  c10(["up:structuredNameType"]):::iri 
  c4([sアミロイド前駆体タンパク質^^<http://www.w3.org/1999/02/22-rdf-syntax-ns#langString>"]):::literal 
  c6(["up:Protein"]):::iri 
  subgraph s1["https://data.allie.dbcls.jp/sparql"]
    style s1 stroke-width:4px;
    f0[["?englishLabel = 'en'"]]
    f0 --> v1
    v2 --"rdfs:label"-->  c4
    v2 --"rdfs:label"-->  v1
  end
  bind1[/"str(?englishLabel)"/]
  v1 --o bind1
  bind1 --as--o v3
  v4 --"a"-->  c6
  subgraph union0[" Union "]
  subgraph union0l[" "]
    style union0l fill:#abf,stroke-dasharray: 3 3;
    bind2[/VALUES ?partType/]
    bind2-->v6
    bind20(["up:domain"])
    bind20 --> bind2
    bind21(["up:component"])
    bind21 --> bind2
    v4 -->v6--> v7
    subgraph union1[" Union "]
    subgraph union1l[" "]
      style union1l fill:#abf,stroke-dasharray: 3 3;
      v7 --"up:alternativeName"-->  v5
    end
    subgraph union1r[" "]
      style union1r fill:#abf,stroke-dasharray: 3 3;
      v7 --"up:recommendedName"-->  v5
    end
    union1r <== or ==> union1l
    end
  end
  subgraph union0r[" "]
    style union0r fill:#abf,stroke-dasharray: 3 3;
    subgraph union2[" Union "]
    subgraph union2l[" "]
      style union2l fill:#abf,stroke-dasharray: 3 3;
      v4 --"up:alternativeName"-->  v5
    end
    subgraph union2r[" "]
      style union2r fill:#abf,stroke-dasharray: 3 3;
      v4 --"up:recommendedName"-->  v5
    end
    union2r <== or ==> union2l
    end
  end
  union0r <== or ==> union0l
  end
  v5 -->v8--> v3
  v8 --"rdfs:subPropertyOf"-->  c10