A set of SPARQL examples that are used in different SIB resources
Find UniProtKB entries with merged loci in Bordetella avium
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
PREFIX up: <http://purl.uniprot.org/core/>
SELECT
?protein
(GROUP_CONCAT(?locusName; separator=',') AS ?locusNames)
WHERE
{
?protein a up:Protein ;
up:organism taxon:360910 ;
up:encodedBy ?gene .
?gene up:locusName ?locusName .
}
GROUP BY ?protein
HAVING (COUNT(?locusName) > 1)
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
v4("?_anon_524857e97b124dceaa8a4ecc8d1a18276479")
v2("?gene")
v3("?locusName"):::projected
v5("?locusNames")
v1("?protein"):::projected
a1((" "))
c5(["taxon:360910"]):::iri
c3(["up:Protein"]):::iri
f0[[" > '1^^xsd:integer'"]]
f0 --> a1
v1 --"a"--> c3
v1 --"up:organism"--> c5
v1 --"up:encodedBy"--> v2
v2 --"up:locusName"--> v3
bind3[/"count(?locusName)"/]
v3 --o bind3
bind3 --as--o v4
bind4[/"?locusName"/]
v3 --o bind4
bind4 --as--o v5