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Retrieve UniProtKB entries with sequences that are composed of fragments

Use at

• https://sparql.uniprot.org/sparql/

PREFIX up: <http://purl.uniprot.org/core/>


SELECT DISTINCT 
  ?protein
WHERE {
  ?protein a up:Protein ;
    up:sequence ?sequence .
  MINUS { ?sequence up:fragment [] }
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?protein"):::projected 
  v2("?sequence")
  a1((" "))
  c2(["up:Protein"]):::iri 
  v1 --"a"-->  c2
  v1 --"up:sequence"-->  v2
  subgraph minus0["MINUS"]
    style minus0 stroke-width:6px,fill:pink,stroke:red;
    v2 --"up:fragment"-->  a1
  end