sparql-examples

A set of SPARQL examples that are used in different SIB resources

View the Project on GitHub sib-swiss/sparql-examples

44

Find the Rhea and InterPro combinations in UniProtKB entries.

Use at

PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX up: <http://purl.uniprot.org/core/>

SELECT 
    ?interpro
	?rhea
FROM <http://sparql.uniprot.org/uniprot>
WHERE 
{
  ?protein up:reviewed true .
  ?protein up:annotation ?annotation .
  ?annotation up:catalyticActivity ?rhea .
  ?protein rdfs:seeAlso ?interpro .
  ?interpro up:database <http://purl.uniprot.org/database/InterPro> .
} ORDER BY ?rhea
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v3("?annotation")
  v4("?interpro"):::projected 
  v2("?protein")
  v1("?rhea"):::projected 
  c2(["true^^xsd:boolean"]):::literal 
  c7([http://purl.uniprot.org/database/InterPro]):::iri 
  v2 --"up:reviewed"-->  c2
  v2 --"up:annotation"-->  v3
  v3 --"up:catalyticActivity"-->  v1
  v2 --"rdfs:seeAlso"-->  v4
  v4 --"up:database"-->  c7