sparql-examples

A set of SPARQL examples that are used in different SIB resources

View the Project on GitHub sib-swiss/sparql-examples

51

Find all proteins linked to arachidonate (CHEBI:32395)

Use at

PREFIX CHEBI: <http://purl.obolibrary.org/obo/CHEBI_>
PREFIX rh: <http://rdf.rhea-db.org/>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX up: <http://purl.uniprot.org/core/>


SELECT 
    DISTINCT
        ?uniprot
        ?uniprotID
        ?recname
        ?gene
        ?chebi
        ?uniprotName
WHERE {
  SERVICE <https://sparql.rhea-db.org/sparql> {
     VALUES (?chebi) { (CHEBI:32395) }
     ?rhea rh:side/rh:contains/rh:compound ?compound .
     ?compound rh:chebi ?chebi .
     ?chebi up:name ?uniprotName .
  }
  ?uniprot up:annotation/up:catalyticActivity/up:catalyzedReaction ?rhea .
  ?uniprot up:mnemonic ?uniprotID .
  ?uniprot up:recommendedName/up:fullName ?recname .
  OPTIONAL {?uniprot up:encodedBy/skos:prefLabel ?gene .}
}
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?chebi"):::projected 
  v3("?compound")
  v8("?gene"):::projected 
  v7("?recname"):::projected 
  v2("?rhea")
  v5("?uniprot"):::projected 
  v6("?uniprotID"):::projected 
  v4("?uniprotName"):::projected 
  a1((" "))
  a2((" "))
  a3((" "))
  a4((" "))
  a5((" "))
  a6((" "))
  subgraph s1["https://sparql.rhea-db.org/sparql"]
    style s1 stroke-width:4px;
    bind0[/VALUES ?chebi/]
    bind0-->v1
    bind00(["CHEBI:32395"])
    bind00 --> bind0
    v2 --"rh:side"-->  a1
    a1 --"rh:contains"-->  a2
    a2 --"rh:compound"-->  v3
    v3 --"rh:chebi"-->  v1
    v1 --"up:name"-->  v4
  end
  v5 --"up:annotation"-->  a3
  a3 --"up:catalyticActivity"-->  a4
  a4 --"up:catalyzedReaction"-->  v2
  v5 --"up:mnemonic"-->  v6
  v5 --"up:recommendedName"-->  a5
  a5 --"up:fullName"-->  v7
  subgraph optional0["(optional)"]
  style optional0 fill:#bbf,stroke-dasharray: 5 5;
    v5 -."up:encodedBy".->  a6
    a6 --"skos:prefLabel"-->  v8
  end