59

Count all isoforms for a given proteome

Use at

• https://sparql.uniprot.org/sparql/

PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
PREFIX up: <http://purl.uniprot.org/core/>

PREFIX proteome:<http://purl.uniprot.org/proteomes/>
SELECT
  (COUNT(DISTINCT ?sequence) AS ?allIsoforms)
WHERE
{
  ?protein up:reviewed true .
  ?protein up:organism taxon:9606 .
  ?protein up:sequence ?sequence .
  ?protein up:proteome/^skos:narrower proteome:UP000005640 .
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v3("?allIsoforms")
  v1("?protein")
  v2("?sequence"):::projected 
  a1((" "))
  c2(["true^^xsd:boolean"]):::literal 
  c7([http://purl.uniprot.org/proteomes/UP000005640]):::iri 
  c4(["taxon:9606"]):::iri 
  v1 --"up:reviewed"-->  c2
  v1 --"up:organism"-->  c4
  v1 --"up:sequence"-->  v2
  v1 --"up:proteome"-->  a1
  c7 --"skos:narrower"-->  a1
  bind1[/"count(?sequence)"/]
  v2 --o bind1
  bind1 --as--o v3