5

Select a mapping of UniProtKB to PDB entries using the UniProtKB cross-references to the PDB database

Use at

• https://sparql.uniprot.org/sparql/

PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX up: <http://purl.uniprot.org/core/>

SELECT ?protein ?db
WHERE
{
    ?protein a up:Protein .
    ?protein rdfs:seeAlso ?db .
    ?db up:database <http://purl.uniprot.org/database/PDB>
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?db"):::projected 
  v1("?protein"):::projected 
  c5([http://purl.uniprot.org/database/PDB]):::iri 
  c2(["up:Protein"]):::iri 
  v1 --"a"-->  c2
  v1 --"rdfs:seeAlso"-->  v2
  v2 --"up:database"-->  c5