61

rq turtle/ttl

• federated query
• Ensembl
• Rhea
• enzyme
• gene name
• protein name
• list

Select the Gene Protein Reaction sets for Human (Ensembl Gene, Human UniProtKB, Catalyzed Rhea reactions)

Use at

• https://sparql.uniprot.org/sparql/

PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
PREFIX up: <http://purl.uniprot.org/core/>

SELECT
  DISTINCT # Disinct because there might be more than one transcript for a gene leading to duplicates
    ?ensemblGene
    ?protein 
    ?rhea
WHERE {
  ?protein up:reviewed true ;
           up:organism taxon:9606 .
  ?protein up:annotation ?caa ;
           rdfs:seeAlso ?ensemblTranscript .
  ?ensemblTranscript up:database <http://purl.uniprot.org/database/Ensembl> .
	?caa up:catalyticActivity ?ca .
  ?ca up:catalyzedReaction ?rhea .
  ?ensemblTranscript up:transcribedFrom ?ensemblGene 
}