7

rq turtle/ttl

• protein name
• gene name
• entry status

Select reviewed UniProtKB entries (Swiss-Prot), and their recommended protein name, that have a preferred gene name that contains the text 'DNA'

Use at

• https://sparql.uniprot.org/sparql/

PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX up: <http://purl.uniprot.org/core/>

SELECT ?protein ?name
WHERE
{
        ?protein a up:Protein .
        ?protein up:reviewed true .
        ?protein up:recommendedName ?recommended .
        ?recommended up:fullName ?name .
        ?protein up:encodedBy ?gene .
        ?gene skos:prefLabel ?text .
        FILTER CONTAINS(?text, 'DNA')
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v5("?gene")
  v4("?name"):::projected 
  v2("?protein"):::projected 
  v3("?recommended")
  v1("?text")
  c5(["true^^xsd:boolean"]):::literal 
  c3(["up:Protein"]):::iri 
  f0[["contains(?text,'DNA')"]]
  f0 --> v1
  v2 --"a"-->  c3
  v2 --"up:reviewed"-->  c5
  v2 --"up:recommendedName"-->  v3
  v3 --"up:fullName"-->  v4
  v2 --"up:encodedBy"-->  v5
  v5 --"skos:prefLabel"-->  v1