A set of SPARQL examples that are used in different SIB resources
Find UniProtKB proteins involved in metabolic diseases using the MeSH concept for 'Metabolic Diseases'.
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX up: <http://purl.uniprot.org/core/>
SELECT
?disease ?protein
WHERE {
SERVICE<https://id.nlm.nih.gov/mesh/sparql> {
GRAPH <http://id.nlm.nih.gov/mesh> {
# Mesh M0013493 represents the concept 'Metabolic Diseases'
?mesh <http://id.nlm.nih.gov/mesh/vocab#broaderDescriptor>* ?broader .
?broader <http://id.nlm.nih.gov/mesh/vocab#preferredConcept> <http://id.nlm.nih.gov/mesh/M0013493> .
}
}
GRAPH <http://sparql.uniprot.org/diseases>{
?disease a up:Disease ;
rdfs:seeAlso ?mesh .
?mesh up:database <http://purl.uniprot.org/database/MeSH> .
}
GRAPH <http://sparql.uniprot.org/uniprot> {
?protein up:annotation/up:disease ?disease .
}
}
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
v2("?broader")
v3("?disease"):::projected
v1("?mesh")
v4("?protein"):::projected
a1((" "))
c11([http://purl.uniprot.org/database/MeSH]):::iri
c7(["up:Disease"]):::iri
c5([http://id.nlm.nih.gov/mesh/M0013493]):::iri
subgraph s1["https://id.nlm.nih.gov/mesh/sparql"]
style s1 stroke-width:4px;
v1 --http://id.nlm.nih.gov/mesh/vocab#broaderDescriptor--> v2
v2 --http://id.nlm.nih.gov/mesh/vocab#preferredConcept--> c5
end
v3 --"a"--> c7
v3 --"rdfs:seeAlso"--> v1
v1 --"up:database"--> c11
v4 --"up:annotation"--> a1
a1 --"up:disease"--> v3