sparql-examples

A set of SPARQL examples that are used in different SIB resources

View the Project on GitHub sib-swiss/sparql-examples

neXtProt/NXQ_00013

Proteins that have a protein kinase domain but lack protein kinase activity

Use at

PREFIX : <http://nextprot.org/rdf/>
PREFIX nextprot_cv: <http://nextprot.org/rdf/terminology/>

SELECT DISTINCT ?entry WHERE {
 ?entry :isoform ?iso.
 ?iso :region /:term nextprot_cv:DO-00529.
 filter not exists { ?iso :enzymeClassification / :term /:childOf nextprot_cv:2_7_-_- }
}
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?entry"):::projected 
  v1("?iso")
  a3((" "))
  a1((" "))
  a2((" "))
  c4([":terminology/2_7_-_-"]):::iri 
  c7([":terminology/DO-00529"]):::iri 
  f0[["not  "]]
  subgraph f0e0["Exists Clause"]
    e0v1 --":enzymeClassification"-->  e0a1
    e0a1 --":term"-->  e0a2
    e0a2 --":childOf"-->  e0c4
    e0v1("?iso"):::projected 
    e0a1((" ")):::projected 
    e0a2((" ")):::projected 
    e0c4([":terminology/2_7_-_-"]):::iri 
  end
  f0--EXISTS--> f0e0
  f0 --> v1
  f0 --> c1
  f0 --> a1
  f0 --> c2
  f0 --> a2
  f0 --> c3
  f0 --> c4
  v1 --":enzymeClassification"-->  a1
  a1 --":term"-->  a2
  a2 --":childOf"-->  c4
  v2 --":isoform"-->  v1
  v1 --":region"-->  a3
  a3 --":term"-->  c7