A set of SPARQL examples that are used in different SIB resources
Proteins with at least 2 HPA antibodies whose genes are located on chromosome 21 and that are highly expressed according to IHC in heart
PREFIX : <http://nextprot.org/rdf/>
PREFIX nextprot_cv: <http://nextprot.org/rdf/terminology/>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
select ?entry WHERE {
SELECT DISTINCT ?entry ?id WHERE {
?entry :gene / :chromosome "21"^^xsd:string .
?entry :isoform / :expressionProfile ?s1.
?s1 :term / :childOf nextprot_cv:TS-0445.
?s1 :evidence ?evi.
?evi :observedExpression :High.
?evi :evidenceCode nextprot_cv:ECO_0001055.
?entry :isoform / :antibodyMapping ?map.
?map :evidence / :reference / :accession ?id .
}
} group by ?entry having (count(?id)>=2)
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
v6("?_anon_aaf95e3c346c4c97af230d5bcfeba8ab1747")
v1("?entry"):::projected
v3("?evi")
v5("?id")
v4("?map")
v2("?s1")
a2((" "))
a3((" "))
a4((" "))
a5((" "))
a6((" "))
a7((" "))
a1((" "))
c12([":High"]):::iri
c14([":terminology/ECO_0001055"]):::iri
c9([":terminology/TS-0445"]):::iri
c4(["21"]):::literal
f0[[" >= '2^^xsd:integer'"]]
f0 --> a1
v1 --":gene"--> a2
a2 --":chromosome"--> c4
v1 --":isoform"--> a3
a3 --":expressionProfile"--> v2
v2 --":term"--> a4
a4 --":childOf"--> c9
v2 --":evidence"--> v3
v3 --":observedExpression"--> c12
v3 --":evidenceCode"--> c14
v1 --":isoform"--> a5
a5 --":antibodyMapping"--> v4
v4 --":evidence"--> a6
a6 --":reference"--> a7
a7 --":accession"--> v5
bind2[/"count(?id)"/]
v5 --o bind2
bind2 --as--o v6