neXtProt/NXQ_00021

Proteins with at least one HPA antibody that are located in the peroxisome

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX nextprot_cv: <http://nextprot.org/rdf/terminology/>

SELECT DISTINCT ?entry WHERE {
 values ?peroxiloc {nextprot_cv:GO_0005777 nextprot_cv:SL-0204} # GO and SL values for peroxisome

 ?entry :isoform ?iso.
 ?iso :antibodyMapping ?map.
 ?iso :cellularComponent ?loc .
 ?loc :term /:childOf ?peroxiloc. # peroxisomal
 filter not exists { ?loc :negativeEvidence ?negev. } # No negative localization evidence
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v4("?entry"):::projected 
  v5("?iso")
  v1("?loc")
  v6("?map")
  v2("?negev")
  v3("?peroxiloc")
  a1((" "))
  f0[["not  "]]
  subgraph f0e0["Exists Clause"]
    e0v1 --":negativeEvidence"-->  e0v2
    e0v1("?loc"):::projected 
    e0v2("?negev"):::projected 
  end
  f0--EXISTS--> f0e0
  f0 --> v1
  f0 --> c1
  f0 --> v2
  v1 --":negativeEvidence"-->  v2
  bind1[/VALUES ?peroxiloc/]
  bind1-->v3
  bind10([":terminology/GO_0005777"])
  bind10 --> bind1
  bind11([":terminology/SL-0204"])
  bind11 --> bind1
  v4 --":isoform"-->  v5
  v5 --":antibodyMapping"-->  v6
  v5 --":cellularComponent"-->  v1
  v1 --":term"-->  a1
  a1 --":childOf"-->  v3