NXQ_00022

rq turtle/ttl

• function
• tutorial

Proteins with no function annotated

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX nextprot_cv: <http://nextprot.org/rdf/terminology/>

SELECT DISTINCT ?entry WHERE {
 ?entry :isoform ?iso.
 filter not exists { ?iso :functionInfo ?_. }
 filter not exists { ?iso :catalyticActivity ?_ .}
 filter not exists { ?iso :transportActivity ?_ .}
 filter not exists { ?iso :pathway ?_. }
 filter not exists {
 ?iso :function / :term ?fterm .
			 filter(?fterm != nextprot_cv:GO_0005524 && ?fterm != nextprot_cv:GO_0000287 && ?fterm != nextprot_cv:GO_0005515 && ?fterm != nextprot_cv:GO_0042802
			 && ?fterm != nextprot_cv:GO_0008270 && ?fterm != nextprot_cv:GO_0051260 && ?fterm != nextprot_cv:GO_0005509
					 && ?fterm != nextprot_cv:GO_0003676 && ?fterm != nextprot_cv:GO_0003824 && ?fterm != nextprot_cv:GO_0007165 && ?fterm != nextprot_cv:GO_0035556
					 && ?fterm != nextprot_cv:GO_0046914 && ?fterm != nextprot_cv:GO_0046872)
 }
 filter not exists { ?entry :existence :Uncertain } # Remove PE5 proteins
}