neXtProt/NXQ_00026

Proteins interacting with at least one protein which is located in the mitochondrion

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX nextprot_cv: <http://nextprot.org/rdf/terminology/>

SELECT DISTINCT ?entry WHERE {
 values ?mitoloc {nextprot_cv:SL-0173 nextprot_cv:GO_0005739} # SL and GO values for mitochondrion

 ?entry :isoform / :interaction ?it .
 ?it :quality :GOLD . # remove this filter for lower quality interactions
 ?it :interactant ?interactant.
 ?interactant :isoform? / :cellularComponent ?loc .
 # the question mark at :isoform allows to select also isoform-specific interactions
 ?loc :term / :childOf ?mitoloc.
 filter not exists { ?loc :negativeEvidence ?negev. } # No negative localization evidence
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v4("?entry"):::projected 
  v6("?interactant")
  v5("?it")
  v1("?loc")
  v3("?mitoloc")
  v2("?negev")
  a1((" "))
  a2((" "))
  a3((" "))
  c5([":GOLD"]):::iri 
  f0[["not  "]]
  subgraph f0e0["Exists Clause"]
    e0v1 --":negativeEvidence"-->  e0v2
    e0v1("?loc"):::projected 
    e0v2("?negev"):::projected 
  end
  f0--EXISTS--> f0e0
  f0 --> v1
  f0 --> c1
  f0 --> v2
  v1 --":negativeEvidence"-->  v2
  bind1[/VALUES ?mitoloc/]
  bind1-->v3
  bind10([":terminology/SL-0173"])
  bind10 --> bind1
  bind11([":terminology/GO_0005739"])
  bind11 --> bind1
  v4 --":isoform"-->  a1
  a1 --":interaction"-->  v5
  v5 --":quality"-->  c5
  v5 --":interactant"-->  v6
  subgraph union0[" Union "]
  subgraph union0l[" "]
    style union0l fill:#abf,stroke-dasharray: 3 3;
    v6 --":isoform"-->  a2
  end
  subgraph union0r[" "]
    style union0r fill:#abf,stroke-dasharray: 3 3;
  end
  union0r <== or ==> union0l
  end
  a2 --":cellularComponent"-->  v1
  v1 --":term"-->  a3
  a3 --":childOf"-->  v3