neXtProt/NXQ_00034

Proteins with at least one homeobox domain and with at least one variant in the homeobox domain(s)

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX nextprot_cv: <http://nextprot.org/rdf/terminology/>

SELECT DISTINCT ?entry WHERE {
 ?entry :isoform ?iso.
 # with >=1 homeobox domain
 ?iso :region ?st1.
 ?st1 :term nextprot_cv:DO-00312;:start ?start;:end ?end.
 # with >=1 variant
 ?iso :variant ?var.
 ?var :start ?varpos.
 # one variant in the homeobox domain
 filter (?varpos >=?start && ?varpos <=?end)
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v3("?end")
  v4("?entry"):::projected 
  v5("?iso")
  v6("?st1")
  v2("?start")
  v7("?var")
  v1("?varpos")
  c4([":terminology/DO-00312"]):::iri 
  f0[["?varpos >= ?start?varpos <= ?end"]]
  f0 --> v1
  f0 --> v2
  f0 --> v3
  v4 --":isoform"-->  v5
  v5 --":region"-->  v6
  v6 --":term"-->  c4
  v6 --":start"-->  v2
  v6 --":end"-->  v3
  v5 --":variant"-->  v7
  v7 --":start"-->  v1