sparql-examples

A set of SPARQL examples that are used in different SIB resources

View the Project on GitHub sib-swiss/sparql-examples

neXtProt/NXQ_00039

Proteins with a mutagenesis in a position that correspond to an annotated active site

Use at

PREFIX : <http://nextprot.org/rdf/>

SELECT DISTINCT ?entry WHERE {
 ?entry :isoform ?iso.
 ?iso :mutagenesis /:start ?mutaPos.
 ?iso :activeSite /:start ?actsitePos.
 filter (?mutaPos=?actsitePos)
}
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?actsitePos")
  v3("?entry"):::projected 
  v4("?iso")
  v1("?mutaPos")
  a1((" "))
  a2((" "))
  f0[["?mutaPos = ?actsitePos"]]
  f0 --> v1
  f0 --> v2
  v3 --":isoform"-->  v4
  v4 --":mutagenesis"-->  a1
  a1 --":start"-->  v1
  v4 --":activeSite"-->  a2
  a2 --":start"-->  v2