sparql-examples

A set of SPARQL examples that are used in different SIB resources

View the Project on GitHub sib-swiss/sparql-examples

neXtProt/NXQ_00054

Proteins which are "Receptor binding" according to GO and have the Swiss-Prot keyword "Immunity"

Use at

PREFIX : <http://nextprot.org/rdf/>
PREFIX nextprot_cv: <http://nextprot.org/rdf/terminology/>

SELECT DISTINCT ?entry WHERE {
 ?entry :isoform ?iso.
 ?iso :function ?statement.
 ?statement :term / :childOf nextprot_cv:GO_0005102.
 filter not exists { ?statement :negativeEvidence ?negev. } # No negative function evidence
 ?iso :uniprotKeyword/:term nextprot_cv:KW-0391.
}
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v3("?entry"):::projected 
  v4("?iso")
  v2("?negev")
  v1("?statement")
  a1((" "))
  a2((" "))
  c8([":terminology/KW-0391"]):::iri 
  c6([":terminology/GO_0005102"]):::iri 
  f0[["not  "]]
  subgraph f0e0["Exists Clause"]
    e0v1 --":negativeEvidence"-->  e0v2
    e0v2("?negev"):::projected 
    e0v1("?statement"):::projected 
  end
  f0--EXISTS--> f0e0
  f0 --> v1
  f0 --> c1
  f0 --> v2
  v1 --":negativeEvidence"-->  v2
  v3 --":isoform"-->  v4
  v4 --":function"-->  v1
  v1 --":term"-->  a1
  a1 --":childOf"-->  c6
  v4 --":uniprotKeyword"-->  a2
  a2 --":term"-->  c8