NXQ_00063

rq turtle/ttl

• domain
• method
• nucleotide binding
• region
• tutorial

Proteins that have at least one RRM RNA-binding domain and either no GO "RNA binding" or a GO "RNA binding" with evidence cv:ECO_0000501 or cv:ECO_0000250

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX nextprot_cv: <http://nextprot.org/rdf/terminology/>

SELECT DISTINCT ?entry WHERE {
 {
 ?entry :isoform ?iso.
 # >=1 RRM RNA-binding domain
 ?iso :region/:term nextprot_cv:DO-00581.
 # No GO "RNA binding"
 filter not exists {
 ?iso :function/:term /:childOf nextprot_cv:GO_0003723
 }
 }
 union{
 ?entry :isoform ?iso.
 # >=1 RRM RNA-binding domain
 ?iso :region/:term nextprot_cv:DO-00581.
 # GO "RNA binding" with evidence IEA or ISS
 ?iso :function ?s1.
 ?s1 :term /:childOf nextprot_cv:GO_0003723.
 filter not exists { ?s1 :negativeEvidence ?negev. } # No negative function evidence
 ?s1 :evidence /:evidenceCode /:childOf ?pcode.
 values ?pcode { nextprot_cv:ECO_0000501 nextprot_cv:ECO_0000250 }
 }
}