neXtProt/NXQ_00066

Proteins that are cytoplasmic with alternate O-glycosylation or phosphorylation at the same positions

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX nextprot_cv: <http://nextprot.org/rdf/terminology/>

SELECT DISTINCT ?entry WHERE {
 values ?cytoloc {nextprot_cv:SL-0086 nextprot_cv:GO_0005737} # SL and GO values for cytoplasm

 ?entry :isoform ?iso.
 ?iso :cellularComponent ?loc .
 ?loc :term /:childOf ?cytoloc .
 filter not exists {?loc :negativeEvidence ?negev} # No negative localization evidence
 ?iso :modifiedResidue /:term ?ptmtype.
 ?iso :modifiedResidue /:start ?ptmpos.
 filter (?ptmtype in (nextprot_cv:PTM-0253, nextprot_cv:PTM-0254, nextprot_cv:PTM-0255))
 ?iso :glycosylationSite /:start ?ptmpos.
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v4("?cytoloc")
  v5("?entry"):::projected 
  v6("?iso")
  v2("?loc")
  v3("?negev")
  v7("?ptmpos")
  v1("?ptmtype")
  a1((" "))
  a2((" "))
  a3((" "))
  a4((" "))
  list0c3([":terminology/PTM-0255"]):::iri 
  list0c1([":terminology/PTM-0253"]):::iri 
  list0c2([":terminology/PTM-0254"]):::iri 
  list0c1 --o f0
  list0c2 --o f0
  list0c3 --o f0
  f0[[" in "]]
  f0 --> v1
  f1[["not  "]]
  subgraph f1e1["Exists Clause"]
    e1v1 --":negativeEvidence"-->  e1v2
    e1v1("?loc"):::projected 
    e1v2("?negev"):::projected 
  end
  f1--EXISTS--> f1e1
  f1 --> v2
  f1 --> c4
  f1 --> v3
  v2 --":negativeEvidence"-->  v3
  bind2[/VALUES ?cytoloc/]
  bind2-->v4
  bind20([":terminology/SL-0086"])
  bind20 --> bind2
  bind21([":terminology/GO_0005737"])
  bind21 --> bind2
  v5 --":isoform"-->  v6
  v6 --":cellularComponent"-->  v2
  v2 --":term"-->  a1
  a1 --":childOf"-->  v4
  v6 --":modifiedResidue"-->  a2
  a2 --":term"-->  v1
  v6 --":modifiedResidue"-->  a3
  a3 --":start"-->  v7
  v6 --":glycosylationSite"-->  a4
  a4 --":start"-->  v7