neXtProt/NXQ_00084

Proteins whose genes are on chromosome 18 and that are experimentally (cv:ECO_0000269) known to be glycosylated or phosphorylated or acetylated

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX nextprot_cv: <http://nextprot.org/rdf/terminology/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>

SELECT DISTINCT ?entry {
 ?entry :gene / :chromosome "18"^^xsd:string.
 ?entry :isoform ?iso.
 {
 ?iso :glycosylationSite ?ptm1.
 ?ptm1 :evidence /:evidenceCode / :childOf nextprot_cv:ECO_0000269
 }
 union {
 ?iso :modifiedResidue ?ptm2.
 ?ptm2 rdfs:comment ?com.
 ?ptm2 :evidence / :evidenceCode / :childOf nextprot_cv:ECO_0000269
 filter (regex(?com, '^phospho|acetyl','i'))
 }
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v4("?com")
  v1("?entry"):::projected 
  v2("?iso")
  v3("?ptm1")
  v5("?ptm2")
  a1((" "))
  a2((" "))
  a3((" "))
  a4((" "))
  a5((" "))
  c3(["18"]):::literal 
  c9([":terminology/ECO_0000269"]):::iri 
  v1 --":gene"-->  a1
  a1 --":chromosome"-->  c3
  v1 --":isoform"-->  v2
  subgraph union0[" Union "]
  subgraph union0l[" "]
    style union0l fill:#abf,stroke-dasharray: 3 3;
    f0[["regex(?com,'^phospho|acetyl','i')"]]
    f0 --> v4
    v2 --":modifiedResidue"-->  v5
    v5 --"rdfs:comment"-->  v4
    v5 --":evidence"-->  a4
    a4 --":evidenceCode"-->  a5
    a5 --":childOf"-->  c9
  end
  subgraph union0r[" "]
    style union0r fill:#abf,stroke-dasharray: 3 3;
    v2 --":glycosylationSite"-->  v3
    v3 --":evidence"-->  a2
    a2 --":evidenceCode"-->  a3
    a3 --":childOf"-->  c9
  end
  union0r <== or ==> union0l
  end