neXtProt/NXQ_00112

Proteins located in nucleus and nowhere else

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>

select ?entry WHERE {
 {
 select ?entry (count(?loc) as ?anyLoc) (sum(?inNucleus) as ?nucleusLoc)
 WHERE {
 ?entry :isoform / :cellularComponent ?loc .
 ?loc :evidence / :negative false .
 ?loc :term ?locterm.
 bind( exists {
 ?locterm :childOf / rdfs:label ?label.
 filter (regex(?label, '^[Nn]ucleus$'))
 } as ?inNucleus)
 }
 group by ?entry
 }
 filter ( ?anyLoc = ?nucleusLoc)
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v7("?anyLoc")
  v3("?entry"):::projected 
  v6("?inNucleus")
  v4("?loc")
  v5("?locterm")
  v7("?nucleusLoc")
  a1((" "))
  a2((" "))
  c5(["false^^xsd:boolean"]):::literal 
  f0[["?anyLoc = ?nucleusLoc"]]
  f0 --> v7
  f0 --> v7
  v3 --":isoform"-->  a1
  a1 --":cellularComponent"-->  v4
  v4 --":evidence"-->  a2
  a2 --":negative"-->  c5
  v4 --":term"-->  v5
  f1[["regex(?label,'^#91;Nn#93;ucleus$')"]]
  f1 --> null
  v5 --":childOf"-->  null
  null --"rdfs:label"-->  null
  bind2[/" "/]
  subgraph bind2e0["Exists Clause"]
    e0f0[["regex(?label,'^#91;Nn#93;ucleus$')"]]
    e0f0 --> e0v1
    e0v2 --":childOf"-->  e0a1
    e0a1 --"rdfs:label"-->  e0v1
    e0v1("?label"):::projected 
    e0v2("?locterm"):::projected 
    e0a1((" ")):::projected 
  end
  bind2--EXISTS--> bind2e0
  null --o bind2
  v5 --o bind2
  null --o bind2
  null --o bind2
  null --o bind2
  bind2 --as--o v6
  bind5[/"count(?loc)"/]
  v4 --o bind5
  bind5 --as--o v7
  bind6[/"sum(?inNucleus)"/]
  v6 --o bind6
  bind6 --as--o v7