neXtProt/NXQ_00125

Domains that are entirely covered by 3D structures

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>

SELECT DISTINCT ?domlabel WHERE {
 ?entry :isoform ?isoform.
 ?isoform :pdbMapping ?struc.
 ?struc :start ?s1 ; :end ?s2.
 ?isoform :domain ?dom.
 ?dom :start ?d1 ; :end ?d2.
 ?dom :term/rdfs:label ?domlabel
 filter ((?s1 <= ?d1) && (?s2 >= ?d2))
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?d1")
  v4("?d2")
  v8("?dom")
  v9("?domlabel"):::projected 
  v5("?entry")
  v6("?isoform")
  v1("?s1")
  v3("?s2")
  v7("?struc")
  a1((" "))
  f0[["?s1 <= ?d1?s2 >= ?d2"]]
  f0 --> v1
  f0 --> v2
  f0 --> v3
  f0 --> v4
  v5 --":isoform"-->  v6
  v6 --":pdbMapping"-->  v7
  v7 --":start"-->  v1
  v7 --":end"-->  v3
  v6 --":domain"-->  v8
  v8 --":start"-->  v2
  v8 --":end"-->  v4
  v8 --":term"-->  a1
  a1 --"rdfs:label"-->  v9