neXtProt/NXQ_00130

Proteins with a DNA-binding region but not located in the nucleus

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX nextprot_cv: <http://nextprot.org/rdf/terminology/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>

SELECT DISTINCT ?entry WHERE {
 ?entry :isoform ?iso.
 ?entry :gene / :name / rdfs:label ?gen .
 ?iso :dnaBindingRegion ?dnab.
 filter not exists { ?entry :isoform / :cellularComponent /:term /:childOf nextprot_cv:SL-0191} # SL for nucleus
 filter not exists { ?entry :isoform / :cellularComponent /:term /:childOf nextprot_cv:GO_0005634} # GO for nucleus
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v4("?dnab")
  v1("?entry"):::projected 
  v3("?gen")
  v2("?iso")
  a7((" "))
  a8((" "))
  a4((" "))
  a5((" "))
  a6((" "))
  a1((" "))
  a2((" "))
  a3((" "))
  c5([":terminology/GO_0005634"]):::iri 
  c6([":terminology/SL-0191"]):::iri 
  f0[["not  "]]
  subgraph f0e0["Exists Clause"]
    e0v1 --":isoform"-->  e0a1
    e0a1 --":cellularComponent"-->  e0a2
    e0a2 --":term"-->  e0a3
    e0a3 --":childOf"-->  e0c5
    e0v1("?entry"):::projected 
    e0a1((" ")):::projected 
    e0a2((" ")):::projected 
    e0a3((" ")):::projected 
    e0c5([":terminology/GO_0005634"]):::iri 
  end
  f0--EXISTS--> f0e0
  f0 --> v1
  f0 --> c1
  f0 --> a1
  f0 --> c2
  f0 --> a2
  f0 --> c3
  f0 --> a3
  f0 --> c4
  f0 --> c5
  v1 --":isoform"-->  a1
  a1 --":cellularComponent"-->  a2
  a2 --":term"-->  a3
  a3 --":childOf"-->  c5
  f1[["not  "]]
  subgraph f1e1["Exists Clause"]
    e1v1 --":isoform"-->  e1a1
    e1a1 --":cellularComponent"-->  e1a2
    e1a2 --":term"-->  e1a3
    e1a3 --":childOf"-->  e1c5
    e1v1("?entry"):::projected 
    e1a1((" ")):::projected 
    e1a2((" ")):::projected 
    e1a3((" ")):::projected 
    e1c5([":terminology/SL-0191"]):::iri 
  end
  f1--EXISTS--> f1e1
  f1 --> v1
  f1 --> c1
  f1 --> a4
  f1 --> c2
  f1 --> a5
  f1 --> c3
  f1 --> a6
  f1 --> c4
  f1 --> c6
  v1 --":isoform"-->  a4
  a4 --":cellularComponent"-->  a5
  a5 --":term"-->  a6
  a6 --":childOf"-->  c6
  v1 --":isoform"-->  v2
  v1 --":gene"-->  a7
  a7 --":name"-->  a8
  a8 --"rdfs:label"-->  v3
  v2 --":dnaBindingRegion"-->  v4