neXtProt/NXQ_00132

Proteins with a 3D structure in complex with another human protein which is not reported as binary interactant

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX db: <http://nextprot.org/rdf/db/>

SELECT DISTINCT ?entry WHERE {
 ?entry a :Entry.
 ?entry :reference ?ref.
 ?ref :provenance db:PDB; :accession ?ac.
 ?entry2 a :Entry.
 ?ac ^:accession/^:reference ?entry2.
 filter(?entry != ?entry2).
 filter not exists{?entry :isoform /:binaryInteraction / :interactant ?entry2.}
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v4("?ac")
  v1("?entry"):::projected 
  v2("?entry2")
  v3("?ref")
  a3((" "))
  a1((" "))
  a2((" "))
  c5([":Entry"]):::iri 
  c8([":db/PDB"]):::iri 
  f0[["not  "]]
  subgraph f0e0["Exists Clause"]
    e0v1 --":isoform"-->  e0a1
    e0a1 --":binaryInteraction"-->  e0a2
    e0a2 --":interactant"-->  e0v2
    e0v1("?entry"):::projected 
    e0v2("?entry2"):::projected 
    e0a1((" ")):::projected 
    e0a2((" ")):::projected 
  end
  f0--EXISTS--> f0e0
  f0 --> v1
  f0 --> c1
  f0 --> a1
  f0 --> c2
  f0 --> a2
  f0 --> c3
  f0 --> v2
  v1 --":isoform"-->  a1
  a1 --":binaryInteraction"-->  a2
  a2 --":interactant"-->  v2
  f1[["?entry != ?entry2"]]
  f1 --> v1
  f1 --> v2
  v1 --"a"-->  c5
  v1 --":reference"-->  v3
  v3 --":provenance"-->  c8
  v3 --":accession"-->  v4
  v2 --"a"-->  c5
  a3 --":accession"-->  v4
  v2 --":reference"-->  a3