A set of SPARQL examples that are used in different SIB resources
Proteins involved in both Wnt and Hippo signaling pathways
PREFIX : <http://nextprot.org/rdf/>
PREFIX nextprot_cv: <http://nextprot.org/rdf/terminology/>
SELECT DISTINCT ?entry WHERE {
?entry :isoform ?iso .
# nextprot_cv:GO:0016055 wnt pathway
?iso :goBiologicalProcess ?func1 .
?func1 :term / :childOf nextprot_cv:GO_0016055.
filter not exists { ?func1 :negativeEvidence ?negev. } # No negative function evidence
# nextprot_cv:GO:0035329 Hippo pathway
?iso :goBiologicalProcess ?func2 .
?func2 :term / :childOf nextprot_cv:GO_0035329.
filter not exists { ?func2 :negativeEvidence ?negev. } # No negative function evidence
}
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
v4("?entry"):::projected
v3("?func1")
v1("?func2")
v5("?iso")
v2("?negev")
a1((" "))
a2((" "))
c7([":terminology/GO_0035329"]):::iri
c6([":terminology/GO_0016055"]):::iri
f0[["not "]]
subgraph f0e0["Exists Clause"]
e0v1 --":negativeEvidence"--> e0v2
e0v1("?func2"):::projected
e0v2("?negev"):::projected
end
f0--EXISTS--> f0e0
f0 --> v1
f0 --> c1
f0 --> v2
v1 --":negativeEvidence"--> v2
f1[["not "]]
subgraph f1e1["Exists Clause"]
e1v1 --":negativeEvidence"--> e1v2
e1v1("?func1"):::projected
e1v2("?negev"):::projected
end
f1--EXISTS--> f1e1
f1 --> v3
f1 --> c1
f1 --> v2
v3 --":negativeEvidence"--> v2
v4 --":isoform"--> v5
v5 --":goBiologicalProcess"--> v3
v3 --":term"--> a1
a1 --":childOf"--> c6
v5 --":goBiologicalProcess"--> v1
v1 --":term"--> a2
a2 --":childOf"--> c7